Function reference • finalProject

All functions
`RNAseq_diference_btwn_pileup_df`	comparing RNAseq vectors to quantify similarity/difference btwn snp locations
`add_genotype_table()`	Fill the sample_genotype database from VCF file(s)
`compare_vectors()`	compare two SNP vectors
`conduct_experiment()`	Conduct an experiment to attempt to map RNAseq librarys to genomes
`create_bam_pileup_table()`	Create a sqlite database to store sample/genotype data
`create_plink_region_filter()`	Create a plink region filter from GRangeList
`create_sample_geno_db()`	Create a sqlite database to store sample/genotype data
`difference_between_genomes_df`	comparing RNAseq vectors to quantify similarity/difference btwn snp locations
`equivalence_class_dist_matrix()`	Create variants of the distance matrix
`filename_id_subject_mislabel_map`	a dataframe to describe the samples to identify
`filter_comparison_plt`	plot comparing number of uncertains by position
`genome_vectors()`	generate Snp vectors from each genome
`high_expr_genes`	A GRangeList of highly expressed genes
`highly_expressed_gene_virtual_table()`	create virtual table of only highly expressed gene regions in the db
`mapqOver10_no_secondary_results`	results of the most stringent filter on the pileup
`rnaseq_vector()`	get vector of consensus bases over a given set of SNPs in an RNAseq library
`sample_snp_loc_from_pileup()`	extract unique SNP locations from RNAseq library
`sample_snp_ranges()`	extract unique SNP locations from a sample (view in the sample_genome_db) as a dataframe

Reference