create virtual table of only highly expressed gene regions in the db

create virtual table of only highly expressed gene regions in the db

highly_expressed_gene_virtual_table(
  highly_expressed_gene_ranges,
  db_path,
  sample_viewname,
  tablename = "sample_genotype"
)

Arguments

highly_expressed_gene_ranges

a GRangeList of regions over which to create a virtual table (a subset of the entire table)

db_path

a path, eg /path/to/sample_geno_db.sqlite, to where you'd like to create the sqlite database file

sample_viewname

name of the sample view table in the db

tablename

name of the table from which to make the sample view