get vector of consensus bases over a given set of SNPs in an RNAseq library

Source: R/extract_genotype_vectors.R

get vector of consensus bases over a given set of SNPs in an RNAseq library

rnaseq_vector(db_path, snp_df, tablename = "rnaseq_pileup")

Arguments

db_path

path to an RNAseq library pileup sqlite database

snp_df

path to the snp dataframe (see function)

tablename

the table from which to extract the SNPS

Value

RNAseq library Snp vector