subsetting the NetProphetDataSet

subsetting the NetProphetDataSet

Usage

# S4 method for NetProphetDataSet,ANY,ANY,ANY
[(x, i, j, drop = TRUE)

Arguments

x

a NetProphetDataSet object

i

column index or incicies (a numeric or boolean vector)

j

column filter -- an index, name, boolean or vector of them

drop

default TRUE. This may not do anything -- need to check if it is part of the Extending SummarizedExperiment documentation, or a feature I added, then removed and forgot to remove the argument.

Value

a NetProphetDataSet. If the subsetting is on the genes, the regulation matrix will also be gene filtered in the same way as the counts. Column filtering does not currently affect the regulation matrix