A container for expression data meant to be used to infer regulator relationships

A container for expression data meant to be used to infer regulator relationships

Usage

NetProphetDataSet(
  exprMatrix = matrix(0, 0, 0),
  regMatrix = matrix(0, 0, 0),
  ...
)

Arguments

exprMatrix

an expression matrix, eg the kemmeren microarray data set

Slots

regMatrix

a gene (the number of genes in your expression matrix) by regulators (no required number) matrix where the value is TRUE if gene i can be regulated by regulator j, and FALSE otherwise.

See also

• extending SummarizedExperiment. Note that A SummarizedExperiment object becomes a RangedSummarizedExperiment object when rowRanges are added.